Search SNPs in Eksotika papaya genome:
| SNP effect | Pathway | SNP ID | Pos | Ref | Allele | Acid amino | Contigs ID | Gene ID | start | end | Gene desc |
|---|---|---|---|---|---|---|---|---|---|---|---|
| missense_variant | NA | NW_019011598.1_6470 | 6470 | G | C | p.Pro100Ala | NW_019011598.1 | XM_022046249.1 | 4 | 6.500 | tobamovirus multiplication protein 2A |
| intron_variant | NA | NW_019011704.1_138 | 138 | A | C | NW_019011704.1 | XM_022047539.1 | 7 | 1.863 | uncharacterized LOC110818585 | |
| intron_variant | NA | NW_019011704.1_120 | 120 | G | T | NW_019011704.1 | XM_022047539.1 | 7 | 1.863 | uncharacterized LOC110818585 | |
| missense_variant | NA | NW_019011729.1_34 | 34 | A | G | p.Phe520Leu | NW_019011729.1 | XM_022047637.1 | 7 | 2.282 | U-box domain-containing protein 3 |
| intron_variant | NA | NW_019011758.1_2977 | 2977 | T | G | NW_019011758.1 | XM_022047946.1 | 85 | 6.549 | MLO-like protein 8 | |
| missense_variant | NA | NW_019011764.1_1693 | 1693 | T | C | p.Lys131Glu | NW_019011764.1 | XM_022048156.1 | 1.250 | 2.356 | ethylene-responsive transcription factor 5-like |
| 5_prime_UTR_variant | NA | NW_019011764.1_2257 | 2257 | C | G | NW_019011764.1 | XM_022048156.1 | 1.250 | 2.356 | ethylene-responsive transcription factor 5-like | |
| 3_prime_UTR_variant | NA | NW_019011766.1_174 | 174 | G | A | NW_019011766.1 | XM_022048260.1 | 7 | 2.244 | uncharacterized LOC110819141, transcript variant X1 | |
| 3_prime_UTR_variant | NA | NW_019011766.1_174 | 174 | G | A | NW_019011766.1 | XM_022048339.1 | 7 | 2.245 | uncharacterized LOC110819141, transcript variant X2 | |
| intron_variant | NA | NW_019011766.1_174 | 174 | G | A | NW_019011766.1 | XM_022048412.1 | 59 | 2.245 | uncharacterized LOC110819141, transcript variant X3 | |
| SNP effect | SNP ID | Contigs ID |
Search SNPs in Sekaki papaya genome:
| SNP ID | Chr | Pos | Ref | Allele | SNP effect | Gene ID | Hits Accession | Gene Description | Amino acid | SIFT prediction | SIFT score | Ref amino acid | Alternate amino acid | Amino acid position |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GWHBFSD00000001_48139 | GWHBFSD00000001 | 48139 | G | T | intron_variant | sunset01G0000010.t1 | sunset01G0000010.t1 | EVI5-like protein isoform X1 | - | . | . | . | . | - |
| GWHBFSD00000001_48163 | GWHBFSD00000001 | 48163 | T | C | intron_variant | sunset01G0000010.t1 | sunset01G0000010.t1 | EVI5-like protein isoform X1 | - | . | . | . | . | - |
| GWHBFSD00000001_94947 | GWHBFSD00000001 | 94947 | T | C | 5_prime_UTR_variant | sunset01G0000100.t1 | sunset01G0000100.t1 | BPL/LPL catalytic domain-containing protein | - | . | . | . | . | - |
| GWHBFSD00000001_96783 | GWHBFSD00000001 | 96783 | A | T | intron_variant | sunset01G0000110.t1 | sunset01G0000110.t1 | uncharacterized protein LOC110807261 isoform X2 | - | . | . | . | . | - |
| GWHBFSD00000001_96861 | GWHBFSD00000001 | 96861 | G | A | intron_variant | sunset01G0000110.t1 | sunset01G0000110.t1 | uncharacterized protein LOC110807261 isoform X2 | - | . | . | . | . | - |
| GWHBFSD00000001_96783 | GWHBFSD00000001 | 96783 | A | T | intron_variant | sunset01G0000110.t2 | sunset01G0000110.t2 | RING-type E3 ubiquitin transferase BRCA1 | - | . | . | . | . | - |
| GWHBFSD00000001_96861 | GWHBFSD00000001 | 96861 | G | A | intron_variant | sunset01G0000110.t2 | sunset01G0000110.t2 | RING-type E3 ubiquitin transferase BRCA1 | - | . | . | . | . | - |
| GWHBFSD00000001_223734 | GWHBFSD00000001 | 223734 | A | G | intron_variant | sunset01G0000340.t1 | sunset01G0000340.t1 | prohibitin-1, mitochondrial | - | . | . | . | . | - |
| GWHBFSD00000001_285653 | GWHBFSD00000001 | 285653 | T | A | intron_variant | sunset01G0000460.t1 | sunset01G0000460.t1 | isoprenylcysteine alpha-carbonyl methylesterase ICME | - | . | . | . | . | - |
| GWHBFSD00000001_295565 | GWHBFSD00000001 | 295565 | A | G | intron_variant | sunset01G0000460.t1 | sunset01G0000460.t1 | isoprenylcysteine alpha-carbonyl methylesterase ICME | - | . | . | . | . | - |
| Chr | SNP effect | Gene ID | SIFT prediction |